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Publications of Örjan
Carlborg
NOTE:
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Reviews
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de Koning, D.-J., Carlborg, Ö and Haley, C.S. The genetic dissection of
immune response using gene-expression studies and genome mapping. 2005 105:343-352 |
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Carlborg Ö., and Haley, C.S. Opinion: Epistasis: too often neglected in
complex trait studies? Nature Reviews Genetics. 2004 5: 618-625. |
QTL Mapping Methodology
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Rönnegård, L., Mischenko, K., Holmgren, S. and Carlborg, Ö. Increasing the efficiency of VC QTL analysis by using reduced rank haplotype covariance matrices. Genetics 2007 176: 1935-1938 |
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Alvarez-Castro, J. and Carlborg, Ö. A general model for functional and statistical epistasis and its application in QTL analysis. Genetics 2007 176: 1151-1167 |
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Rönnegård, L. and Carlborg, Ö. Separation of base allele and sampling term effects gives new insights in variance component QTL analysis. BMC Genetics 2007, 8:1 |
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Gjuvsland, A., Hayes, B., Plahte, E., Omholt, S., Carlborg, Ö. Statistical epistasis is a generic feature of gene regulatory networks. Genetics 2007 175:.411-420 |
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Carlborg, Ö., De Koning, D.J., Manly, K.F., Chesler, E., Williams, R,W,
& Haley, C.S. Methodological aspects of the genetic dissection of gene
expression. Bioinformatics. 2005 21:2383-2393 |
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Ljungberg, K., Holmgren, S., and Carlborg, Ö. An optimisation algorithm
for simultaneous search for multiple QTL.
Bioinformatics 2004 20:1887-1895 |
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Ljungberg, K., Holmgren, S. and Carlborg, Ö. Efficient algorithms for
Quantitative Trait Locus mapping problems.
Journal of Computational Biology 2002 9:793-804. |
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Carlborg, Ö. and Andersson, L. The use of randomization testing for
detection of multiple epistatic QTL.
Genetical Research 2002 79: 175-184. |
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Carlborg, Ö., Andersson-Eklund, L., Andersson, L. Parallel computing in
regression interval mapping. Journal of
Heredity, 2001 92(5): 449-51. |
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Carlborg, Ö., Andersson, L., Kinghorn, B. The use of a genetic
algorithm for simultaneous mapping of multiple interacting quantitative trait
loci. Genetics 2000 155: 2003-2010 |
QTL Mapping Applied
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Wright D, Butlin RK, Carlborg O. Epistatic regulation of behavioural and morphological traits in the zebrafish (Danio rerio). Behav Genet. 2006 Jun 3; [Epub ahead of print]. |
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Carlborg, Ö., Jacobsson, L., Åhgren, P., Siegel, P., Andersson, L. Epistatsis and the release of genetic variation in response to selection.Nature Genetics 2006 38:418-20. |
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Carlborg, Ö., Brockmann, G.A., & Haley, C.S. Simultaneous mapping
of epistatic QTL in DU6i x DBA/2 mice.
Mammalian Genome. 2005 16:481-494. |
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Keeling, L., Andersson, L., Schütz, K.E., Kerje, S., Fredriksson, R.,
Carlborg, Ö., Cornwallis, C.K., Pizzari, T. & Jensen, P. Chicken
genomics - Plumage pigmentation and spiteful feather-pecking. Nature 2004 431: 645-646. |
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Carlborg, Ö., Hocking, P., Burt, D. and Haley, C. Simultaneous mapping
of epistatic QTL in chickens reveals clusters of QTL pairs with similar
genetic effects on growth. Genetical
Research 2004 83: 197-209. |
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Kerje, S., Carlborg, Ö., Schutz, K., Jacobsson, L., Jensen, P. and
Andersson, L. The Two-fold Difference in Adult Size between the Red
Junglefowl and White Leghorn Chickens Is Largely Explained by a Limited
Number of QTLs. Animal Genetics 2003
34:264-274. |
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Schutz, K., Kerje, S.,
Jacobsson, L., Forkman, B., Carlborg, Ö., Andersson, L., Andersson, L., and Jensen, P. Major growth QTLs
in fowl are related to fearful behavior – possible genetic links
between fear responses and production traits in a red junglefowl x White
Leghorn intercross. Behavioural Genetics 2004 34:121-130. |
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Carlborg, Ö., Kerje, S., Schutz, K., Jacobsson, L., Jensen, P., and
Andersson, L A Global Search Reveals Epistatic Interaction between QTLs for
Early Growth in the Chicken. Genome
Research 2003 13: 413-421. |
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Schütz, K., Kerje, S., Carlborg, Ö., Jacobsson, L., Andersson, L. and
Jensen, P. Analyses of a red junglefowl x White Leghorn intercross reveal
trade-off in resource allocation between behaviour and production traits. Behavioural Genetics 2002 32: 423-433. |
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Park, H.-B., Carlborg, Ö., Marklund, S., Andersson, L. Melanocortin-4
receptor (MC4R) genotypes have no major effect on fatness in a Large White x
Wild Boar intercross. Animal Genetics
2002 33: 155-157 |
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Jeon J-T., Carlborg O, Tornsten A, Giuffra E, Amarger V, Chardon P,
Andersson-Eklund L, Andersson K, Hansson I, Lundstrom K, Andersson L. A
paternally expressed QTL affecting skeletal and cardiac muscle mass in pigs
maps to the IGF2 locus. Nat Genet. 1999
21:157-158 |
Others
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Carlborg, Ö. New methods for mapping quantitative trait loci. PhD thesis, Acta Universitatis Agriculturae
Sueciae, Veterinaria 121, Swedish University of Agricultural Sciences, 2002. |
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Ljungberg, K., Holmgren, S., Carlborg, Ö. Efficient kernel algorithms
for QTL mapping problems. Technical
Report No. 2002-005, Department of Information Technology, Uppsala
University. |
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Giuffra, E., Kijas, J. M. H., Amarger, V., Carlborg, Ö., Jeon, J.T.,
Andersson, L. The origin of the domestic pig: independent domestication
and subsequent introgression. Genetics.
2000 154:1785-1791. |
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Svensson, U.S.H., Sandström, R., Carlborg, Ö., Lennernäs, H. and Ashton,
M. High In situ rat intestinal permeability of artemisinin unaffected by
multiple dosing and with No evidence of P-glycoprotein involvement. Drug Metab Dispos. 1999 27:227-32. |
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Software
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QTLFast – a computationally efficient software for mapping of single
QTL and epistatic QTL pairs. |
Latest update: 06-07-28 08:56